Clinical Data Standards
awslabs/hcls-agent-skills/skills/clinical-data-standardscodingResmi
Resmi Sağlayıcı Skill'iView repo
Reason about clinical data terminology standards — MedDRA hierarchy (LLT→PT→HLT→HLGT→SOC), ICD-10 code structure and grouping, SNOMED CT concept model, LOINC panel relationships, and mapping decisions between systems. Use when the user asks to code adverse events, map diagnoses to ICD-10, choose a coding granularity level, group AEs by SOC or PT, interpret SNOMED CT relationships, select LOINC codes for lab panels, convert between terminology systems, or decide when to aggregate at HLT vs PT lev
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SKILL.md395 satır
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Kurulum
ÖnerilenTek komut — ajanınız otomatik olarak devreye alır.
Kurulum komutunu görmek için yukarıdan bir AI aracı seçin.
veya
Manuel Kurulum
Daha fazla adımDosyayı indirin ve ajanınızın sistem istemine yapıştırın.
Skill detayları
Versiyonv1.0.0
YazarAWS Labs
Kategoricoding
Skill IDawslabs/hcls-agent-skills/skills/clinical-data-standards
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