- Ngs Amplicon MicrobiomeKick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.openai/plugins3,972
- Ngs Analysis RouterRoute BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.openai/plugins3,972
- Ngs Atacseq Peaks QcRun or plan ATAC-seq QC, alignment, TSS enrichment, fragment-size, blacklist, peak-calling, consensus peak, and differential accessibility workflows.openai/plugins3,972
- Ngs Bcl To FastqValidate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.openai/plugins3,972
- Ngs Bulk RnaseqDispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.openai/plugins3,972
- Ngs Bulk Rnaseq Counts QcRun or plan bulk RNA-seq FASTQ-to-count processing with sample-sheet, strandedness, genome annotation, alignment or pseudoalignment, MultiQC, and count-matrix QC checks.openai/plugins3,972
- Ngs Bulk Rnaseq Differential ExpressionRun or plan bulk RNA-seq differential-expression analysis from count matrices with replicate, design formula, contrast, batch, normalization, QC plot, and result-table checks.openai/plugins3,972
- Ngs Chip Cutrun Peaks QcRun or plan ChIP-seq, CUT&RUN, or CUT&Tag QC, control handling, spike-in, peak calling, broad-vs-narrow target selection, replicate, bigWig, and differential binding workflows.openai/plugins3,972
- Ngs Dna Germline VariantsRun or plan deep germline WGS, WES, targeted-panel, cohort, or trio variant-calling workflows with reference-build, known-sites, QC, joint-calling, and annotation checks.openai/plugins3,972
- Ngs Dna Somatic VariantsRun or plan tumor-normal, tumor-only, WGS, WES, or cancer-panel somatic variant workflows with pairing, contamination, panel-of-normals, purity, QC, and annotation checks.openai/plugins3,972
- Ngs Dna Umi Panel VariantsRun or plan targeted DNA panel variant workflows that use UMIs, duplex consensus reads, molecular barcodes, low-frequency calling, target coverage, and panel-specific QC.openai/plugins3,972
- Ngs Dna Variant CallingDispatch WGS, WES, or targeted DNA variant requests to germline, somatic, or UMI-panel skills, then plan public nf-core/sarek, GATK4, DeepVariant, samtools, or bcftools workflows.openai/plugins3,972
- Ngs Epigenomics PeaksDispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows.openai/plugins3,972
- Ngs Fastq QcValidate FASTQ inputs, run local FastQC/MultiQC QC, interpret QC signals, and optionally execute fastp or Cutadapt trimming branches without overwriting raw reads.openai/plugins3,972
- Ngs Runtime EnvCheck whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.openai/plugins3,972
- Ngs Scrna SeqRoute single-cell or single-nucleus RNA-seq FASTQs to public count-generation workflows and defer post-count matrix QC, annotation, clustering, and UMAP analysis to the embedded scrna-seq-qc skill.openai/plugins3,972
- Ngs Shotgun MetagenomicsKick off public shotgun metagenomics QC, host-depletion, taxonomic profiling, and functional profiling workflows using nf-core/taxprofiler, Kraken2, Bracken, MetaPhlAn, and HUMAnN.openai/plugins3,972
- Node Link And Diagram LayoutChoose and apply automatic layout strategies for node-link diagrams and connected-node visuals. Use when the user asks how to auto-arrange nodes, reduce line crossings, route edges, avoid overlaps, stabilize layout, or choose graph-layout algorithms for network diagrams, dependency graphs, database schema diagrams, ERDs, state machines, decision trees, flow diagrams, box-and-line editors, or other line-connected nodes.openai/plugins3,972
- Notion Knowledge CaptureCapture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.openai/plugins3,972
- Notion Meeting IntelligencePrepare meeting materials with Notion context and Codex research; use when gathering context, drafting agendas/pre-reads, and tailoring materials to attendees.openai/plugins3,972
- Notion Research DocumentationResearch across Notion and synthesize into structured documentation; use when gathering info from multiple Notion sources to produce briefs, comparisons, or reports with citations.openai/plugins3,972
- Notion Spec To ImplementationTurn Notion specs into implementation plans, tasks, and progress tracking; use when implementing PRDs/feature specs and creating Notion plans + tasks from them.openai/plugins3,972
- ObservabilityVercel Observability expert guidance — Drains (logs, traces, speed insights, web analytics), Web Analytics, Speed Insights, runtime logs, custom events, OpenTelemetry integration, and monitoring dashboards. Use when instrumenting, debugging, or optimizing application performance and user experience on Vercel.openai/plugins3,972
- Omniverse Cad To SimreadyCoordinate the end-to-end CAD/source-asset to SimReady workflow. Use for broad requests such as CAD to SimReady, source asset to simulation-ready USD, or prop packaging that require conversion, material/physics assignment, SimReady conformance, validation, and optional package creation; deploy or verify Content Agents services first when property assignment is enabled; route single-stage work through nested references.openai/plugins3,972
- Omniverse Realtime ViewerUse as the top-level router for Omniverse Realtime Viewer USD app requests and focused viewer reference documents.openai/plugins3,972
- Omniverse Usd Performance TuningTop-level workflow skill for USD performance diagnosis and optimization. Use for slow loading, high memory, low FPS, or 'optimize my scene' requests; delegates auth/runtime setup to Phase 0 owners.openai/plugins3,972
- Openai Ads Conversions SetupGuide Codex through instrumenting or extending repositories with OpenAI Ads Measurement Pixel and optional Conversions API (CAPI). Use when adding Ads conversion tracking, browser pixel events, server-side conversion events, event_id deduplication, CAPI secret placeholders, incremental conversion coverage, or validating Ads conversion setup. Applies to local repositories and PR review contexts; prioritize safe, reviewable diffs and never place API keys or secrets in source code or client bundlesopenai/plugins3,972
- Openai Api TroubleshootingUse when an OpenAI API request fails and Codex needs to classify the likely cause, explain the next step, and route to the right follow-up. Covers common runtime failures such as blocked outbound network access, invalid credentials, exhausted API quota or credits, rate limits, and model, project, or organization access issues; delegate key provisioning to openai-platform-api-key and current documentation lookups to openai-docs.openai/plugins3,972
- Openai Platform Api KeyUse when Codex is asked to build, run, test, debug, or configure an OpenAI-backed or provider-unspecified AI app, UI, script, CLI, generator, or tool, especially requests phrased only as "using AI" or generators driven by forms/user input; also use for OPENAI_API_KEY or sk-proj setup. Treat this as the credential gate: inspect safely, ask reuse-vs-new before API work, and never expose plaintext.openai/plugins3,972
- Opentargets SkillSubmit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices. Use when a user wants concise Open Targets summaries or per-datasource evidence contextopenai/plugins3,972
- Outlook CalendarHandle Outlook Calendar workflows, including delegated/shared calendar writes. Use when the user asks for schedule understanding, availability checks, meeting scheduling, intelligent rescheduling, meeting prep, reminder updates, RSVP responses, recurring maintenance, travel coordination, deadline planning, or safe create, update, reschedule, respond, attach, delete, or cancel changes with timezone-aware event times and attendee validation.openai/plugins3,972
- Outlook Calendar Daily BriefBuild polished one-day Outlook Calendar briefs. Use when the user asks for today, tomorrow, or a specific date summary with an agenda, conflict flags, free windows, remaining-meeting readouts, or a calendar brief, and Outlook Calendar is available.openai/plugins3,972
- Outlook Calendar Free Up TimeFind ways to open up meaningful free time in Outlook Calendar. Use when the user wants to clear part of their schedule, make room for focus time, create a longer uninterrupted block, or see the smallest set of calendar changes that would give time back.openai/plugins3,972
- Outlook Calendar Group SchedulerFind and rank good meeting times for several people using Outlook Calendar data. Use when the user wants to schedule a meeting, compare candidate slots across attendees, find the best compromise time, or add a room/resource check after narrowing the attendee-compatible options.openai/plugins3,972
- Outlook Calendar Meeting PrepBuild a practical meeting prep brief from an Outlook Calendar event and its nearby Microsoft context. Use when the user wants to prepare for an upcoming meeting, understand what to read beforehand, pull in linked notes or docs, or get a concise brief on what the meeting appears to require.openai/plugins3,972
- Outlook Calendar Shared CalendarsSafely write to delegated or shared Outlook calendars. Use when the user explicitly wants to create, update, respond to, cancel, delete, or add a small attachment to an event on a shared or delegated Outlook Calendar.openai/plugins3,972
- Outlook EmailTriage Outlook mail, extract tasks, clean up subscriptions, draft responses, and route shared mailbox work. Use when the user asks to inspect an Outlook inbox or thread, summarize open actions and deadlines, clean up newsletters, draft replies or forwards, organize mailbox follow-up work, or act on a delegated/shared Outlook mailbox.openai/plugins3,972
- Outlook Email Inbox TriageTriage an Outlook inbox into actionable buckets such as urgent, needs reply soon, waiting, and FYI using connected Outlook data. Use when the user asks to triage the inbox, rank what needs attention, find what still needs a reply, or separate important mail from noise.openai/plugins3,972
- Outlook Email Reply DraftingDraft Outlook email replies safely from connected mailbox context. Use when the user wants to reply to a thread, decide whether to reply-all, prepare a draft before sending, or turn the latest Outlook message into a polished response.openai/plugins3,972
- Outlook Email Shared MailboxesWork with delegated or shared Outlook Email mailboxes. Use when the user explicitly wants to read another mailbox, send from or on behalf of a shared mailbox, mark shared mail read or unread, move shared mail, or browse folders in a shared mailbox.openai/plugins3,972
- Outlook Email Subscription CleanupClean up Outlook newsletters and recurring subscription email safely. Use when the user wants to unsubscribe, separate newsletters from human mail, move recurring senders into folders, or organize low-signal subscription traffic without losing important messages.openai/plugins3,972
- Outlook Email Task ExtractionExtract action items, deadlines, commitments, and owners from Outlook email threads and mailbox searches. Use when the user wants a task list from one thread, several related messages, or a mailbox slice, including who owes what and when.openai/plugins3,972
- Packaging NotarizationPrepare macOS packaging and notarization workflows. Use when archiving apps, validating bundles, or explaining distribution-only failures.openai/plugins3,972
- PaymentsStripe payments integration guidance — native Vercel Marketplace setup, checkout sessions, webhook handling, subscription billing, and the Stripe SDK. Use when implementing payments, subscriptions, or processing transactions.openai/plugins3,972
- Pharmgkb SkillSubmit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search. Use when a user wants concise PharmGKB summariesopenai/plugins3,972
- Phaser 2d GameImplement 2D browser games with Phaser. Use when the user wants a Phaser, TypeScript, and Vite stack for scenes, gameplay systems, cameras, sprite animation, and DOM-overlay HUD patterns.openai/plugins3,972
- Physical Ai Infrastructure Setup And Resilient ScalingUse when the user wants to set up, scale, validate, or harden NVIDIA physical AI infrastructure for synthetic data generation workflows across local MicroK8s or Azure AKS, including Kubernetes clusters, inference endpoint deployment, OSMO deployment, workload submission readiness, and infrastructure failure recovery. Trigger keywords: physical ai infrastructure, resilient scaling, SDG infrastructure, microk8s, azure aks, NVCF deployment, NIM Operator, OSMO deploy, workflow scaling. Don't triggeropenai/plugins3,972
- Physical Ai Neural ReconstructionRouter for NVIDIA NuRec/NRE: USDZ rendering, NCore conversion, 3DGS, gRPC sensor sim, PhysicalAI HF datasets. Do NOT use for SimReady or infra setup.openai/plugins3,972
- Plan Zoom IntegrationUse when planning Zoom integrations.openai/plugins3,972
- Plan Zoom ProductUse when choosing products.openai/plugins3,972
- Plugin CreatorCreate and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new personal plugin, add optional plugin structure, or generate or update personal or repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata.openai/plugins3,972
- Plugin EvalHelp engineers evaluate a local skill or plugin, explain why it scored that way, show what to fix first, measure real token usage, benchmark starter scenarios, or decide what to run next. Use when the user says things like "evaluate this skill", "give me an analysis of the game dev skill", "why did this score that way", "what should I fix first", "measure the real token usage of this skill", or "what should I run next?".openai/plugins3,972
- PosthogAnalyze product data and manage product tooling in PostHog. Use when the user wants product analytics or insights, HogQL/SQL queries, feature flags, experiments and A/B tests, error tracking, session replay, surveys, LLM analytics, dashboards, data warehouse, or PostHog documentation.openai/plugins3,972
- Precedent TransactionsPrecedent M&A transactions analysis with deal multiples and acquisition historyopenai/plugins3,972
- Pride SkillSubmit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Use when a user wants concise PRIDE summariesopenai/plugins3,972
- Probe SdkUse when using Probe SDK.openai/plugins3,972
- Proteomexchange SkillSubmit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples. Use when a user wants concise PROXI summariesopenai/plugins3,972
- Provision DropletUse when the user wants to spin up / create / launch / provision a DigitalOcean droplet (or "a remote dev box on DO") and connect to it from Codex as a remote SSH workspace.openai/plugins3,972
- Pubchem Pug SkillSubmit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata. Use when a user wants concise PubChem summariesopenai/plugins3,972
- Quickgo SkillSubmit compact QuickGO requests for GO terms, annotations, and ontology traversal. Use when a user wants concise QuickGO summariesopenai/plugins3,972